Revealing stuff through genome sequencing.

Maybe you thought a lot of genome papers provide “insights” — and you’d be right. But did you know that even more genome papers “reveal” stuff? It’s true! Here’s a list of nearly 500 examples.

Abe, A., et al. (2012). “Genome sequencing reveals agronomically important loci in rice using MutMap.” Nature Biotechnology 30(2): 174-178.

Acarkan, A., et al. (2000). “Comparative genome analysis reveals extensive conservation of genome organisation for Arabidopsis thaliana and Capsella rubella.” Plant Journal 23(1): 55-62.

Ahola, V., et al. (2014). “The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera.” Nature Communications 5.

Aklujkar, M., et al. (2012). “The genome of Pelobacter carbinolicus reveals surprising metabolic capabilities and physiological features.” Bmc Genomics 13.

Alcaraz, L. D., et al. (2008). “The genome of Bacillus coahuilensis reveals adaptations essential for survival in the relic of an ancient marine environment.” Proceedings of the National Academy of Sciences of the United States of America 105(15): 5803-5808.

Alexander, L. W. and K. E. Woeste (2014). “Pyrosequencing of the northern red oak (Quercus rubra L.) chloroplast genome reveals high quality polymorphisms for population management.” Tree Genetics & Genomes 10(4): 803-812.

Almeida, N. F., et al. (2009). “A Draft Genome Sequence of Pseudomonas syringae pv. tomato T1 Reveals a Type III Effector Repertoire Significantly Divergent from That of Pseudomonas syringae pv. tomato DC3000.” Molecular Plant-Microbe Interactions 22(1): 52-62.

Ammayappan, A. and V. N. Vakharia (2009). “Complete Nucleotide Analysis of the Structural Genome of the Infectious Bronchitis Virus Strain Md27 Reveals its Mosaic Nature.” Viruses-Basel 1(3): 1166-1177.

Andersen, M. T., et al. (2013). “Comparison of the complete genome sequence of two closely related isolates of ‘Candidatus Phytoplasma australiense’ reveals genome plasticity.” Bmc Genomics 14.

Anderson, I., et al. (2008). “Genome sequence of Thermofilum pendens reveals an exceptional loss of biosynthetic pathways without genome reduction.” Journal of Bacteriology 190(8): 2957-2965.

Anderson, I. J., et al. (2009). “The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenarchaeota.” Bmc Genomics 10.

Andrade, B. G. N., et al. (2014). “The genome of a clinical Klebsiella variicola strain reveals virulence-associated traits and a pl9-like plasmid.” Fems Microbiology Letters 360(1): 13-16.

Arraes, F. B. M., et al. (2007). “Differential metabolism of Mycoplasma species as revealed by their genomes.” Genetics and Molecular Biology 30(1): 182-189.

Ash, K., et al. (2014). “A comparison of the Caulobacter NA1000 and K31 genomes reveals extensive genome rearrangements and differences in metabolic potential.” Open biology 4(10).

Ashelford, K., et al. (2011). “Full genome re-sequencing reveals a novel circadian clock mutation in Arabidopsis.” Genome Biology 12(3).

Atanur, S. S., et al. (2013). “Genome Sequencing Reveals Loci under Artificial Selection that Underlie Disease Phenotypes in the Laboratory Rat.” Cell 154(3): 691-703.

Axelsson, E., et al. (2005). “Comparison of the chicken and turkey genomes reveals a higher rate of nucleotide divergence on microchromosomes than macrochromosomes.” Genome Research 15(1): 120-125.

Ayala-del-Rio, H. L., et al. (2010). “The Genome Sequence of Psychrobacter arcticus 273-4, a Psychroactive Siberian Permafrost Bacterium, Reveals Mechanisms for Adaptation to Low-Temperature Growth.” Applied and Environmental Microbiology 76(7): 2304-2312.

Aylward, F. O., et al. (2013). “Comparison of 26 Sphingomonad Genomes Reveals Diverse Environmental Adaptations and Biodegradative Capabilities.” Applied and Environmental Microbiology 79(12): 3724-3733.

Azcarate-Peril, M. A., et al. (2008). “Analysis of the genome sequence of Lactobacillus gasseri ATCC 33323 reveals the molecular basis of an autochthonous intestinal organism.” Applied and Environmental Microbiology 74(15): 4610-4625.

Azuma, Y., et al. (2009). “Whole-genome analyses reveal genetic instability of Acetobacter pasteurianus.” Nucleic Acids Research 37(17): 5768-5783.

Baek, K. T., et al. (2013). “Genetic Variation in the Staphylococcus aureus 8325 Strain Lineage Revealed by Whole-Genome Sequencing.” PLoS ONE 8(9).

Ballvora, A., et al. (2007). “Comparative sequence analysis of Solanum and Arabidopsis in a hot spot for pathogen resistance on potato chromosome V reveals a patchwork of conserved and rapidly evolving genome segments.” Bmc Genomics 8.

Banyai, K., et al. (2014). “Whole-genome sequencing of a green bush viper reovirus reveals a shared evolutionary history between reptilian and unusual mammalian orthoreoviruses.” Archives of Virology 159(1): 153-158.

Barry, J. D., et al. (2005). “What the genome sequence is revealing about trypanosome antigenic variation.” Biochemical Society Transactions 33: 986-989.

Barth, D. and T. U. Berendonk (2011). “The mitochondrial genome sequence of the ciliate Paramecium caudatum reveals a shift in nucleotide composition and codon usage within the genus Paramecium.” Bmc Genomics 12.

Bellgard, M. I., et al. (2009). “Genome Sequence of the Pathogenic Intestinal Spirochete Brachyspira hyodysenteriae Reveals Adaptations to Its Lifestyle in the Porcine Large Intestine.” PLoS ONE 4(3).

Bentley, S. D., et al. (2012). “The Genome of Mycobacterium Africanum West African 2 Reveals a Lineage-Specific Locus and Genome Erosion Common to the M. tuberculosis Complex.” Plos Neglected Tropical Diseases 6(2).

Berg Miller, M. E., et al. (2009). “Diversity and strain specificity of plant cell wall degrading enzymes revealed by the draft genome of Ruminococcus flavefaciens FD-1.” PLoS ONE 4(8): e6650-e6650.

Biggs, P. J., et al. (2011). “Whole-genome comparison of two Campylobacter jejuni isolates of the same sequence type reveals multiple loci of different ancestral lineage.” PLoS ONE 6(11): e27121 [27114pp.]-e27121 [27114pp.].

Bishop-Lilly, K. A., et al. (2012). “Whole genome sequencing of phage resistant Bacillus anthracis mutants reveals an essential role for cell surface anchoring protein CsaB in phage AP50c adsorption.” Virology Journal 9.

Bitton, D. A., et al. (2011). “Augmented Annotation of the Schizosaccharomyces pombe Genome Reveals Additional Genes Required for Growth and Viability.” Genetics 187(4): 1207-U1369.

Blanc, G., et al. (2012). “The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.” Genome Biology 13(5).

Blanc, G., et al. (2010). “The Chlorella variabilis NC64A Genome Reveals Adaptation to Photosymbiosis, Coevolution with Viruses, and Cryptic Sex.” Plant Cell 22(9): 2943-2955.

Boekhorst, J., et al. (2004). “The complete genomes of Lactobacillus plantarum and Lactobacillus johnsonii reveal extensive differences in chromosome organization and gene content.” Microbiology-Sgm 150: 3601-3611.

Bogen, C., et al. (2013). “Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.” Bmc Genomics 14.

Bontell, I. L., et al. (2009). “Whole genome sequencing of a natural recombinant Toxoplasma gondii strain reveals chromosome sorting and local allelic variants.” Genome Biology 10(5).

Borneman, A. R., et al. (2011). “Whole-Genome Comparison Reveals Novel Genetic Elements That Characterize the Genome of Industrial Strains of Saccharomyces cerevisiae.” PLoS genetics 7(2).

Borneman, A. R., et al. (2012). “The genome sequence of the wine yeast VIN7 reveals an allotriploid hybrid genome with Saccharomyces cerevisiae and Saccharomyces kudriavzevii origins.” FEMS Yeast Research 12(1): 88-96.

Borneman, A. R., et al. (2012). “Comparative analysis of the Oenococcus oeni pan genome reveals genetic diversity in industrially-relevant pathways.” Bmc Genomics 13.

Bos, K. I., et al. (2014). “Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis.” Nature 514(7523): 494-+.

Bottacini, F., et al. (2012). “Bifidobacterium asteroides PRL2011 Genome Analysis Reveals Clues for Colonization of the Insect Gut.” PLoS ONE 7(9).

Bowler, C., et al. (2008). “The Phaeodactylum genome reveals the evolutionary history of diatom genomes.” Nature 456(7219): 239-244.

Bradbury, J. (1997). “Helicobacter pylori genome sequence reveals potential new drug targets.” Lancet 350(9075): 415-415.

Bradel, B. G., et al. (2000). “Sequence analysis and genome organisation of poinsettia mosaic virus (PnMV) reveal closer relationship to marafiviruses than to tymoviruses.” Virology 271(2): 289-297.

Brayton, K. A., et al. (2005). “Complete genome sequencing of Anaplasma marginale reveals that the surface is skewed to two superfamilies of outer membrane proteins.” Proceedings of the National Academy of Sciences of the United States of America 102(3): 844-849.

Brazilian National Genome Project, C. (2003). “The complete genome sequence of Chromobacterium violaceum reveals remarkable and exploitable bacterial adaptability.” Proceedings of the National Academy of Sciences of the United States of America 100(20): 11660-11665.

Bridger, S. L., et al. (2012). “Genome Sequencing of a Genetically Tractable Pyrococcus furiosus Strain Reveals a Highly Dynamic Genome.” Journal of Bacteriology 194(15): 4097-4106.

Brzuszkiewicz, E., et al. (2013). “Legionella oakridgensis ATCC 33761 genome sequence and phenotypic characterization reveals its replication capacity in amoebae.” International Journal of Medical Microbiology 303(8): 514-528.

Brzuszkiewicz, E., et al. (2011). “Genome sequence analyses of two isolates from the recent Escherichia coli outbreak in Germany reveal the emergence of a new pathotype: Entero-Aggregative-Haemorrhagic Escherichia coli (EAHEC).” Archives of Microbiology 193(12): 883-891.

Burkhart, C. N. and C. G. Burkhart (2006). “Genome sequence of Propionibacterium acnes reveals immunogenic and surface-associated genes confirming existence of the acne biofilm.” International Journal of Dermatology 45(7): 872-872.

Campo, D., et al. (2013). “Whole-genome sequencing of two North American Drosophila melanogaster populations reveals genetic differentiation and positive selection.” Molecular Ecology 22(20): 5084-5097.

Canovas, D., et al. (2003). “Heavy metal tolerance and metal homeostasis in Pseudomonas putida as revealed by complete genome analysis.” Environmental Microbiology 5(12): 1242-1256.

Cantu, D., et al. (2013). “Genome analyses of the wheat yellow (stripe) rust pathogen Puccinia striiformis f. sp tritici reveal polymorphic and haustorial expressed secreted proteins as candidate effectors.” Bmc Genomics 14.

Cao, Z., et al. (2013). “The genome of Mesobuthus martensii reveals a unique adaptation model of arthropods.” Nature Communications 4.

Carneiro, M., et al. (2014). “Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication.” Science 345(6200): 1074-1079.

Carvalho, C. M., et al. (2012). “The genome and proteome of a Campylobacter coli bacteriophage vB_CcoM-IBB_35 reveal unusual features.” Virology Journal 9.

Caspermeyer, J. (2014). “New Analysis of Seven Ant Genomes Reveals Clues to Longer Life Spans Associated with Sociality.” Molecular Biology and Evolution 31(7): 1937-1937.

Castoe, T. A., et al. (2014). “The Burmese python genome reveals the molecular basis for extreme adaptation in snakes (vol 110, pg 20645, 2013).” Proceedings of the National Academy of Sciences of the United States of America 111(8): 3194-3194.

Causse, M., et al. (2013). “Whole genome resequencing in tomato reveals variation associated with introgression and breeding events.” Bmc Genomics 14.

Chao, D.-Y., et al. (2005). “Strategically examining the full-genome of dengue virus type 3 in clinical isolates reveals its mutation spectra.” Virology Journal 2.

Charkowski, A. O. (2007). Potential Disease Control Strategies Revealed by Genome Sequencing and Functional Genetics of Plant Pathogenic Bacteria.

Chau, R., et al. (2012). “Genome of an octopus-derived Pseudoalteromonas reveals unprecedented natural product biosynthesis gene clusters.” Planta Medica 78(11): 1057-1057.

Chavez-Galarza, J., et al. (2013). “Signatures of selection in the Iberian honey bee (Apis mellifera iberiensis) revealed by a genome scan analysis of single nucleotide polymorphisms.” Molecular Ecology 22(23): 5890-5907.

Chen, C., et al. (2013). “Genome comparison of two Magnaporthe oryzae field isolates reveals genome variations and potential virulence effectors.” Bmc Genomics 14.

Chen, J., et al. (2013). “Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution.” Nature Communications 4.

Chen, X. H., et al. (2009). “Genome analysis of Bacillus amyloliquefaciens FZB42 reveals its potential for biocontrol of plant pathogens.” Journal of Biotechnology 140(1-2): 27-37.

Chen, Y., et al. (2013). “Whole-Genome Sequencing of Gentamicin-Resistant Campylobacter coli Isolated from US Retail Meats Reveals Novel Plasmid-Mediated Aminoglycoside Resistance Genes.” Antimicrobial Agents and Chemotherapy 57(11): 5398-5405.

Chen, Y.-f., et al. (2011). “Deep sequencing of Cotesia vestalis bracovirus reveals the complexity of a polydnavirus genome.” Virology 414(1): 42-50.

Chen, Y. P., et al. (2013). “Genome sequencing and comparative genomics of honey bee microsporidia, Nosema apis reveal novel insights into host-parasite interactions.” Bmc Genomics 14.

Chen, Z., et al. (2012). “The genome and transcriptome of a newly described psychrophilic archaeon, Methanolobus psychrophilus R15, reveal its cold adaptive characteristics.” Environmental Microbiology Reports 4(6): 633-641.

Chipman, A. D., et al. (2014). “The First Myriapod Genome Sequence Reveals Conservative Arthropod Gene Content and Genome Organisation in the Centipede Strigamia maritima.” PLoS biology 12(11): e1002005-e1002005.

Cho, N.-H., et al. (2007). “The Orientia tsutsugamushi genome reveals massive proliferation of conjugative type IV secretion system and host-cell interaction genes.” Proceedings of the National Academy of Sciences of the United States of America 104(19): 7981-7986.

Choo, S. W., et al. (2012). “Analysis of the Genome of Mycobacterium abscessus Strain M94 Reveals an Uncommon Cluster of tRNAs.” Journal of Bacteriology 194(20): 5724-5724.

Chopin, A., et al. (1999). “Analysis of the Bacillus subtilis genome sequence reveals nine new T-box leaders.” Molecular Microbiology 31(3): 1010-1011.

Chouaia, B., et al. (2014). “Acetic Acid Bacteria Genomes Reveal Functional Traits for Adaptation to Life in Insect Guts.” Genome Biology and Evolution 6(4): 912-920.

Christopherson, M. R., et al. (2013). “The Genome Sequences of Cellulomonas fimi and “Cellvibrio gilvus” Reveal the Cellulolytic Strategies of Two Facultative Anaerobes, Transfer of “Cellvibrio gilvus” to the Genus Cellulomonas, and Proposal of Cellulomonas gilvus sp nov.” PLoS ONE 8(1).

Chung, W.-H., et al. (2014). “Population Structure and Domestication Revealed by High-Depth Resequencing of Korean Cultivated and Wild Soybean Genomes.” DNA Research 21(2): 153-167.

Cohen-Gihon, I., et al. (2014). “Whole-Genome Sequencing of the Nonproteolytic Bacillus anthracis V770-NP1-R Strain Reveals Multiple Mutations in Peptidase Loci.” Genome announcements 2(1).

Cokus, S. J., et al. (2008). “Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning.” Nature 452(7184): 215-219.

Colangeli, R., et al. (2014). “Whole Genome Sequencing of Mycobacterium tuberculosis Reveals Slow Growth and Low Mutation Rates during Latent Infections in Humans.” PLoS ONE 9(3).

Conlan, S., et al. (2012). “Staphylococcus epidermidis pan-genome sequence analysis reveals diversity of skin commensal and hospital infection-associated isolates.” Genome Biology 13(7).

Conrad, T. M., et al. (2009). “Whole-genome resequencing of Escherichia coli K-12 MG1655 undergoing short-term laboratory evolution in lactate minimal media reveals flexible selection of adaptive mutations.” Genome Biology 10(10).

Creason, A. L., et al. (2014). “Analysis of Genome Sequences from Plant Pathogenic Rhodococcus Reveals Genetic Novelties in Virulence Loci.” PLoS ONE 9(7).

Crossman, L. C., et al. (2008). “The complete genome, comparative and functional analysis of Stenotrophomonas maltophilia reveals an organism heavily shielded by drug resistance determinants.” Genome Biology 9(4).

Cruz-Morales, P., et al. (2013). “The Genome Sequence of Streptomyces lividans 66 Reveals a Novel tRNA-Dependent Peptide Biosynthetic System within a Metal-Related Genomic Island.” Genome Biology and Evolution 5(6): 1165-1175.

Cuomo, C. A., et al. (2012). “Microsporidian genome analysis reveals evolutionary strategies for obligate intracellular growth.” Genome Research 22(12): 2478-2488.

Cuomo, C. A., et al. (2007). “The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization.” Science 317(5843): 1400-1402.

Curtis, B. A., et al. (2012). “Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs.” Nature 492(7427): 59-65.

Darrasse, A., et al. (2013). “Genome sequence of Xanthomonas fuscans subsp fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads.” Bmc Genomics 14.

Dasmahapatra, K. K., et al. (2012). “Butterfly genome reveals promiscuous exchange of mimicry adaptations among species.” Nature 487(7405): 94-98.

de Wit, P. J. G. M., et al. (2012). “The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry.” PLoS genetics 8(11).

den Bakker, H. C., et al. (2011). “Genome sequencing reveals diversification of virulence factor content and possible host adaptation in distinct subpopulations of Salmonella enterica.” Bmc Genomics 12.

Desbiez, C. and H. Lecoq (2004). “The nucleotide sequence of Watermelon mosaic virus (WMV, Potyvirus) reveals interspecific recombination between two related potyviruses in the 5 ‘ part of the genome.” Archives of Virology 149(8): 1619-1632.

Deshpande, N. P., et al. (2011). “Sequencing and validation of the genome of a Campylobacter concisus reveals intra-species diversity.” PLoS ONE 6(7): e22170 [22113pp.]-e22170 [22113pp.].

Devi, S. M., et al. (2006). “Genomes of Helicobacter pylori from native Peruvians suggest admixture of ancestral and modern lineages and reveal a western type cag-pathogenicity island.” Bmc Genomics 7.

Dharia, N. V., et al. (2010). “Whole-genome sequencing and microarray analysis of ex vivo Plasmodium vivax reveal selective pressure on putative drug resistance genes.” Proceedings of the National Academy of Sciences of the United States of America 107(46): 20045-20050.

Di Genova, A., et al. (2014). “Whole genome comparison between table and wine grapes reveals a comprehensive catalog of structural variants.” Bmc Plant Biology 14.

Dietrich, F. S., et al. (2013). “Genomes of Ashbya Fungi Isolated from Insects Reveal Four Mating-Type Loci, Numerous Translocations, Lack of Transposons, and Distinct Gene Duplications.” G3-Genes Genomes Genetics 3(8): 1225-1239.

Dolores, J. and K. J. F. Satchell (2013). “Analysis of Vibrio cholerae Genome Sequences Reveals Unique rtxA Variants in Environmental Strains and an rtxA-Null Mutation in Recent Altered El Tor Isolates.” Mbio 4(2).

Dorscht, J., et al. (2009). “Comparative Genome Analysis of Listeria Bacteriophages Reveals Extensive Mosaicism, Programmed Translational Frameshifting, and a Novel Prophage Insertion Site.” Journal of Bacteriology 191(23): 7206-7215.

Douillard, F. P., et al. (2013). “Comparative genome analysis of Lactobacillus casei strains isolated from Actimel and Yakult products reveals marked similarities and points to a common origin.” Microbial Biotechnology 6(5): 576-587.

Drexler, J. F., et al. (2011). “Full genome sequence analysis of parechoviruses from Brazil reveals geographical patterns in the evolution of non-structural genes and intratypic recombination in the capsid region.” Journal of General Virology 92: 564-571.

Du, P., et al. (2011). “A large scale comparative genomic analysis reveals insertion sites for newly acquired genomic islands in bacterial genomes.” Bmc Microbiology 11.

Duochun, W., et al. (2011). “Genome sequencing reveals unique mutations in characteristic metabolic pathways and the transfer of virulence genes between V. mimicus and V. cholerae.” PLoS ONE 6(6): e21299 [21210pp.]-e21299 [21210pp.].

Duplouy, A., et al. (2013). “Draft genome sequence of the male-killing Wolbachia strain wBol1 reveals recent horizontal gene transfers from diverse sources.” Bmc Genomics 14.

Dutilh, B. E., et al. (2014). “Comparative genomics of 274 Vibrio cholerae genomes reveals mobile functions structuring three niche dimensions.” Bmc Genomics 15.

Ekman, A., et al. (2009). “Bos taurus genome sequence reveals the assortment of immunoglobulin and surrogate light chain genes in domestic cattle.” Bmc Immunology 10.

Elkins, J. G., et al. (2008). “A korarchaeal genome reveals insights into the evolution of the Archaea.” Proceedings of the National Academy of Sciences of the United States of America 105(23): 8102-8107.

Eppinger, M., et al. (2010). “Genome Sequence of the Deep-Rooted Yersinia pestis Strain Angola Reveals New Insights into the Evolution and Pangenome of the Plague Bacterium.” Journal of Bacteriology 192(6): 1685-1699.

Fani, F., et al. (2011). “Whole genome sequencing of penicillin-resistant Streptococcus pneumoniae reveals mutations in penicillin-binding proteins and in a putative iron permease.” Genome Biology 12(11).

Feng, J., et al. (2008). “Whole Genome Sequencing of Linezolid Resistant Streptococcus pneumoniae Reveal Novel Drug Resistant Mutations.” Abstracts of the Interscience Conference on Antimicrobial Agents and Chemotherapy 48: 181-181.

Feng, J., et al. (2009). “Genome sequencing of linezolid-resistant Streptococcus pneumoniae mutants reveals novel mechanisms of resistance.” Genome Research 19(7): 1214-1223.

Fenn, K. and M. Blaxter (2006). “Wolbachia genomes: revealing the biology of parasitism and mutualism.” Trends in Parasitology 22(2): 60-65.

Fontaine, M. C., et al. (2013). “Complex speciation in the Anopheles gambiae complex revealed by who genome sequencing.” Pathogens and Global Health 107(8): 428-429.

Ford, C., et al. (2012). “Mycobacterium tuberculosis – Heterogeneity revealed through whole genome sequencing.” Tuberculosis 92(3): 194-201.

Fournier, P.-E., et al. (2009). “Analysis of the Rickettsia africae genome reveals that virulence acquisition in Rickettsia species may be explained by genome reduction.” Bmc Genomics 10.

Fouts, D. E., et al. (2013). “Whole genome sequencing and comparative genomic analyses of two Vibrio cholerae O139 Bengal-specific Podoviruses to other N4-like phages reveal extensive genetic diversity.” Virology Journal 10.

Francis, F., et al. (2013). “Comparative genomic analysis of two Burkholderia glumae strains from different geographic origins reveals a high degree of plasticity in genome structure associated with genomic islands.” Molecular Genetics and Genomics 288(3-4): 195-203.

Frantz, L. A. F., et al. (2013). “Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus.” Genome Biology 14(9).

Frech, C. and N. Chen (2011). “Genome Comparison of Human and Non-Human Malaria Parasites Reveals Species Subset-Specific Genes Potentially Linked to Human Disease.” Plos Computational Biology 7(12).

Fricke, W. F., et al. (2006). “The genome sequence of Methanosphaera stadtmanae reveals why this human intestinal archaeon is restricted to methanol and H-2 for methane formation and ATP synthesis.” Journal of Bacteriology 188(2): 642-658.

Frutos, R., et al. (2006). “Comparative genomic analysis of three strains of Ehrlichia ruminantium reveals an active process of genome size plasticity.” Journal of Bacteriology 188(7): 2533-2542.

Gagnevin, L., et al. (2013). “Genome and transcriptome analysis to reveal adaptation to new environments and hosts.” Phytopathology 103(6): 170-171.

Galagan, J. E., et al. (2002). “The genome of M-acetivorans reveals extensive metabolic and physiological diversity.” Genome Research 12(4): 532-542.

Gao, S., et al. (2014). “Genome analysis reveals a novel genetically divergent subgenotype of bovine viral diarrhea virus in China.” Infection Genetics and Evolution 21: 489-491.

Garcia, E., et al. (2003). “The genome sequence of Yersinia pestis bacteriophage phi A1122 reveals an intimate history with the coliphage T3 and T7 genomes.” Journal of Bacteriology 185(17): 5248-5262.

Garrigan, D., et al. (2012). “Genome sequencing reveals complex speciation in the Drosophila simulans clade.” Genome Research 22(8): 1499-1511.

Gartemann, K.-H., et al. (2008). “The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp michiganensis NCPPB382 reveals a large island involved in pathogenicity.” Journal of Bacteriology 190(6): 2138-2149.

George, S. G. and M. J. Leaver (2006). “Xenobiotic conjugation in fish: Organisation and diversity of phase 2 genes revealed by genome sequence and EST data.” Marine Environmental Research 62: S54-S55.

Ghedin, E., et al. (2005). “Large-scale sequencing of human influenza reveals the dynamic nature of viral genome evolution.” Nature 437(7062): 1162-1166.

Ghignone, S., et al. (2012). “The genome of the obligate endobacterium of an AM fungus reveals an interphylum network of nutritional interactions.” Isme Journal 6(1): 136-145.

Ghosh, S., et al. (2013). “Whole genomic analyses of asymptomatic human G1P 6 , G2P 6 and G3P 6 rotavirus strains reveal intergenogroup reassortment events and genome segments of artiodactyl origin.” Infection Genetics and Evolution 16: 165-173.

Gillece, J. D., et al. (2011). “Whole Genome Sequence Analysis of Cryptococcus gattii from the Pacific Northwest Reveals Unexpected Diversity.” PLoS ONE 6(12).

Ginger, M. L. (2005). “Trypanosomatid biology and euglenozoan evolution: New insights and shifting paradigms revealed through genome sequencing.” Protist 156(4): 377-392.

Godel, C., et al. (2012). “The genome of the heartworm, Dirofilaria immitis, reveals drug and vaccine targets.” Faseb Journal 26(11): 4650-4661.

Gokcumen, O., et al. (2014). “Whole genome sequencing of Turkish genomes reveals functional private alleles and impact of genetic interactions with Europe, Asia and Africa.” American Journal of Physical Anthropology 153: 126-127.

Goodhead, I., et al. (2013). “Whole-genome sequencing of Trypanosoma brucei reveals introgression between subspecies that is associated with virulence.” Mbio 4(4).

Goodwin, S. B., et al. (2011). “Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis.” PLoS genetics 7(6).

Goodwin, S. B., et al. (2011). “Mycosphaerella comparative genomics reveals chromosome dynamics, genome evolution, and stealth pathogenesis.” Phytopathology 101(6): S208-S208.

Gordon, J. L. and L. D. Sibley (2005). “Comparative genome analysis reveals a conserved family of actin-like proteins in apicomplexan parasites.” Bmc Genomics 6.

Gou, X., et al. (2014). “Whole-genome sequencing of six dog breeds from continuous altitudes reveals adaptation to high-altitude hypoxia.” Genome Research 24(8): 1308-1315.

Grbic, M., et al. (2011). “The genome of Tetranychus urticae reveals herbivorous pest adaptations.” Nature 479(7374): 487-492.

Guio, H., et al. (2014). “Genome analysis of 17 extensively drug-resistant strains reveals new potential mutations for resistance.” Genome announcements 2(4).

Guo, X., et al. (2012). “Draft genome sequence of Streptomyces coelicoflavus ZG0656 reveals the putative biosynthetic gene cluster of acarviostatin family a-amylase inhibitors.” Letters in Applied Microbiology 55(2): 162-169.

Guo, X., et al. (2014). “Comparative Genome Analysis Reveals Metabolic Versatility and Environmental Adaptations of Sulfobacillus thermosulfidooxidans Strain ST.” PLoS ONE 9(6).

Gusev, O., et al. (2014). “Comparative genome sequencing reveals genomic signature of extreme desiccation tolerance in the anhydrobiotic midge.” Nature Communications 5.

Guy, L., et al. (2004). “Genomic islands encoded by Staphylococcus aureus chromosomes revealed by genometric analyses.” Abstracts of the Interscience Conference on Antimicrobial Agents and Chemotherapy 44: 62-62.

Hafstrom, T., et al. (2011). “Complete genome sequence of Brachyspira intermedia reveals unique genomic features in Brachyspira species and phage-mediated horizontal gene transfer.” Bmc Genomics 12.

Halley, Y. A., et al. (2014). “A Draft De Novo Genome Assembly for the Northern Bobwhite (Colinus virginianus) Reveals Evidence for a Rapid Decline in Effective Population Size Beginning in the Late Pleistocene.” PLoS ONE 9(3).

Hammerl, J. A., et al. (2012). “The Complete Genome Sequence of Bacteriophage CP21 Reveals Modular Shuffling in Campylobacter Group II Phages.” Journal of Virology 86(16): 8896-8896.

Han, X., et al. (2011). “Sequence analysis reveals mosaic genome of Aichi virus.” Virology Journal 8.

Hayashida, K., et al. (2012). “Comparative Genome Analysis of Three Eukaryotic Parasites with Differing Abilities To Transform Leukocytes Reveals Key Mediators of Theileria-Induced Leukocyte Transformation.” Mbio 3(5).

Herrero-Medrano, J. M., et al. (2014). “Whole-genome sequence analysis reveals differences in population management and selection of European low-input pig breeds.” Bmc Genomics 15.

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